v.5.0 build 2020-09
Download FunCoup networks in full format
| FC5.0_A.thaliana_full.gz | 345.06 MB | |
| FC5.0_B.subtilis_full.gz | 2.36 MB | |
| FC5.0_B.taurus_full.gz | 239.00 MB | |
| FC5.0_C.elegans_full.gz | 256.53 MB | |
| FC5.0_C.familiaris_full.gz | 253.57 MB | |
| FC5.0_C.intestinalis_full.gz | 71.75 MB | |
| FC5.0_D.discoideum_full.gz | 52.76 MB | |
| FC5.0_D.melanogaster_full.gz | 125.18 MB | |
| FC5.0_D.rerio_full.gz | 249.83 MB | |
| FC5.0_E.coli_full.gz | 11.88 MB | |
| FC5.0_G.gallus_full.gz | 84.60 MB | |
| FC5.0_H.sapiens_full.gz | 270.87 MB | |
| FC5.0_M.jannaschii_full.gz | 453.05 KB | |
| FC5.0_M.musculus_full.gz | 342.88 MB | |
| FC5.0_O.sativa_full.gz | 151.36 MB | |
| FC5.0_P.falciparum_full.gz | 7.79 MB | |
| FC5.0_R.norvegicus_full.gz | 326.49 MB | |
| FC5.0_S.cerevisiae_full.gz | 31.90 MB | |
| FC5.0_S.pombe_full.gz | 16.17 MB | |
| FC5.0_S.scrofa_full.gz | 95.00 MB | |
| FC5.0_S.solfataricus_full.gz | 1.02 MB |
The full format is a tab-separated value (TSV) format with the following columns:
| Columns | Label | Description |
|---|---|---|
| 0 | PFC | The confidence score |
| 1 | FBS_max | The final Bayesian score (FBS) of the strongest coupling class |
| 2-3 | Gene* | The Ensembl gene identifier of the gene pair |
| 4-7 | FBS_* | The FBS scores of the four different coupling classes (Some species don't have all classes) |
| 8-17 | LLR_* | The log-likelihood ratios (LLRs) of the different evidence types |
| 18-38 | LLR_* | The LLRs of the evidence from the different species |
| 39 | Max_category | The strongest coupling class for this pair. This is also the class for which the LLRs are given. |
Download FunCoup networks in compact format
| FC5.0_A.thaliana_compact.gz | 51.47 MB | |
| FC5.0_B.subtilis_compact.gz | 452.71 KB | |
| FC5.0_B.taurus_compact.gz | 45.64 MB | |
| FC5.0_C.elegans_compact.gz | 39.58 MB | |
| FC5.0_C.familiaris_compact.gz | 43.53 MB | |
| FC5.0_C.intestinalis_compact.gz | 11.85 MB | |
| FC5.0_D.discoideum_compact.gz | 7.72 MB | |
| FC5.0_D.melanogaster_compact.gz | 20.94 MB | |
| FC5.0_D.rerio_compact.gz | 42.41 MB | |
| FC5.0_E.coli_compact.gz | 2.66 MB | |
| FC5.0_G.gallus_compact.gz | 14.08 MB | |
| FC5.0_H.sapiens_compact.gz | 40.83 MB | |
| FC5.0_M.jannaschii_compact.gz | 65.87 KB | |
| FC5.0_M.musculus_compact.gz | 54.21 MB | |
| FC5.0_O.sativa_compact.gz | 25.97 MB | |
| FC5.0_P.falciparum_compact.gz | 1.26 MB | |
| FC5.0_R.norvegicus_compact.gz | 56.17 MB | |
| FC5.0_S.cerevisiae_compact.gz | 4.47 MB | |
| FC5.0_S.pombe_compact.gz | 2.20 MB | |
| FC5.0_S.scrofa_compact.gz | 15.85 MB | |
| FC5.0_S.solfataricus_compact.gz | 145.09 KB |
The compact format is TSV format with first four columns of the full format namely:
| Columns | Label | Description |
|---|---|---|
| 0 | PFC | The confidence score |
| 1 | FBS_max | The final Bayesian score (FBS) of the strongest coupling class |
| 2-3 | Gene* | The Ensembl gene identifier of the gene pair |
License
This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
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